modules/untar

Extract files from tar, tar.gz, tar.bz2, tar.xz archives

untaruncompressextract

https://github.com/nf-core/modules/[...]/modules/nf-core/untar

Description

Extract files from tar, tar.gz, tar.bz2, tar.xz archives

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`archive`
`:file`

File to be untarred

*.{tar,tar.gz,tar.bz2,tar.xz}

Output

name:type

description

pattern

`untar`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*/

`${prefix}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*/

`versions_untar`

`${task.process}`
`:string`

The name of the process

`untar`
`:string`

The name of the tool

`tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//"`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`untar`
`:string`

The name of the tool

`tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//"`
`:eval`

The expression to obtain the version of the tool

Tools

untar
GPL-3.0-or-later

Extract tar, tar.gz, tar.bz2, tar.xz files.

gnu.org/software/tar/manual

modules/untar

Description

Input

`meta`
`:map`

`archive`
`:file`

Output

`untar`

`meta`
`:map`

`${prefix}`
`:map`

`versions_untar`

`${task.process}`
`:string`

`untar`
`:string`

`tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//"`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`untar`
`:string`

`tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//"`
`:eval`

Tools

untar
GPL-3.0-or-later

included in

maintainers

get in touch

modules/untar

Description

Input

meta:map

archive:file

Output

untar

meta:map

${prefix}:map

versions_untar

${task.process}:string

untar:string

tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//":eval

Topics

versions

${task.process}:string

untar:string

tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//":eval

Tools

untar GPL-3.0-or-later

included in

maintainers

get in touch

`meta`
`:map`

`archive`
`:file`

`untar`

`meta`
`:map`

`${prefix}`
`:map`

`versions_untar`

`${task.process}`
`:string`

`untar`
`:string`

`tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//"`
`:eval`

`versions`

`${task.process}`
`:string`

`untar`
`:string`

`tar --version 2>&1 | head -1 | sed "s/tar (GNU tar) //; s/ Copyright.*//"`
`:eval`

untar
GPL-3.0-or-later