Transcript assembly and quantification for RNA-Se
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
Stringtie transcript gtf output(s).
annotation_gtf
Annotation gtf file (optional).
transcript_gtf
*.transcripts.gtf
transcript gtf
*.{transcripts.gtf}
abundance
*.abundance.txt
*.{abundance.txt}
coverage_gtf
*.coverage.gtf
coverage gtf
*.{coverage.gtf}
ballgown
*.ballgown
for running ballgown
*.{ballgown}
versions_stringtie
${task.process}
:string
The name of the process
stringtie
The name of the tool
stringtie --version
:eval
The expression to obtain the version of the tool
versions
Transcript assembly and quantification for RNA-Seq
