Description

Trim low quality bases from FastQ files

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads

:file

List of input FastQ files

*.{fastq.gz}

Output

name:type
description
pattern

reads

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.fastq.gz

:file

Filtered FastQ files

*.{fastq.gz}

versions_seqtk

${task.process}

:string

The name of the process

seqtk

:string

The name of the tool

seqtk 2>&1 | sed -n 's/^Version: //p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

seqtk

:string

The name of the tool

seqtk 2>&1 | sed -n 's/^Version: //p'

:eval

The expression to obtain the version of the tool

Tools

seqtk
MIT

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format