Sorts sequences by id/name/sequence/length
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
fastx
:file
Input fasta/fastq file
*.{fsa,fas,fa,fasta,fastq,fq,fsa.gz,fas.gz,fa.gz,fasta.gz,fastq.gz,fq.gz}
${prefix}.*
Output fasta/fastq file
*.{fasta.gz,fastq.gz}
versions_seqkit
${task.process}
:string
The name of the process
seqkit
The name of the tool
seqkit version | sed 's/^.*v//'
:eval
The expression to obtain the version of the tool
versions
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
