Calculate TIN (transcript integrity number) from RNA-seq reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
Input BAM file
*.{bam}
bai
Index for input BAM file
*.{bai}
bed
BED file containing the reference gene model
*.{bed}
txt
TXT file containing tin.py results summary
*.txt
xls
*.xls
XLS file containing tin.py results
versions_rseqc
${task.process}
:string
The process the versions were collected from
rseqc
The tool name
tin.py --version | sed "s/tin.py //"
:eval
The expression to obtain the version of the tool
versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
