Analyses variant calling files using plink
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
Variant calling file (vcf)
*.{vcf}
bed
*.bed
PLINK binary biallelic genotype table
*.{bed}
bim
*.bim
PLINK extended MAP file
*.{bim}
fam
*.fam
PLINK sample information file
*.{fam}
versions_plink
${task.process}
:string
The name of the process
plink
The name of the tool
plink --version 2>&1 | sed 's/^PLINK v//;s/ .*//'
:eval
The expression to obtain the version of the tool
versions
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner
