Description

Provides fasta index required by minimap2 alignment.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta

:file

Reference database in FASTA format.

Output

name:type
description
pattern

index

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mmi

:file

Minimap2 fasta index.

*.mmi

versions_minimap2

${task.process}

:string

The name of the process

minimap2

:string

The name of the tool

minimap2 --version

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

minimap2

:string

The name of the tool

minimap2 --version

:eval

The expression to obtain the version of the tool

Tools

minimap2
MIT

A versatile pairwise aligner for genomic and spliced nucleotide sequences.