calculate clusters of highly similar sequences
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
db
:file
The input sequence database. Supported formats are FASTA and DIAMOND (.dmnd) format.
*.{dmnd,fa,faa,fasta}(.gz)
tsv
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
*.tsv
a 2-column tabular file with the representative accession as the first column and the member sequence accession as the second column
versions_diamond
${task.process}
:string
The name of the process
diamond
The name of the tool
diamond --version | sed 's/diamond version //g'
:eval
The expression to obtain the version of the tool
versions
Accelerated BLAST compatible local sequence aligner
