Deepcell/mesmer segmentation for whole-cell
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
img
:file
Multichannel image file
*.{tiff,tif,h5,hdf5}
meta2
membrane_img
Optional membrane image to be provided separately.
mask
*.tif
File containing the mask.
*.{tif, tiff}
versions_mesmer
${task.process}
:string
The name of the process
deepcell_mesmer
The name of the tool
0.4.1
The expression to obtain the version of the tool
versions
Deep cell is a collection of tools to segment imaging data
