Description

Dump a cooler’s data to a text stream.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

cool

:file

Path to COOL file

*.{cool,mcool}

resolution

:integer

Resolution

Output

name:type
description
pattern

bedpe

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bedpe

:file

Output text file

*.bedpe

versions_cooler

${task.process}

:string

The name of the process

cooler

:string

The name of the tool

cooler --version 2>&1 | sed "s/cooler, version //"

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

cooler

:string

The name of the tool

cooler --version 2>&1 | sed "s/cooler, version //"

:eval

The expression to obtain the version of the tool