Generate the input coverage table for CONCOCT using a BEDFile
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
BED file describing where each contig was cut up (typically output from CONCOCT’s cut_up_fasta.py)
*.bed
bamfiles
A single or list of BAM files of reads mapped back to original contigs (prior cutting up)
*.bam
baifiles
A single or list of BAM index files (.bai) corresponding to BAM
tsv
*.tsv
Contig coverage table
versions_concoct
${task.process}
:string
The name of the process
concoct
The name of the tool
concoct --version | cut -d " " -f2
:eval
The expression to obtain the version of the tool
versions
Clustering cONtigs with COverage and ComposiTion
