Compresses VCF files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf
:file
VCF file
*.{vcf}
tbi
tabix index file
*.{tbi}
fasta
FASTA reference file
*.{fasta,fa}
mask
BED file used for masking
*.{bed}
*.fa
FASTA reference consensus file
versions_bcftools
${task.process}
:string
The process the versions were collected from
bcftools
The tool name
bcftools --version | sed '1!d; s/^.*bcftools //'
The command used to generate the version of the tool
versions
Create consensus sequence by applying VCF variants to a reference fasta file.
