Concatenate VCF files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcfs
:list
List containing 2 or more vcf files e.g. [ ‘file1.vcf’, ‘file2.vcf’ ]
tbi
List containing 2 or more index files (optional) e.g. [ ‘file1.tbi’, ‘file2.tbi’ ]
vcf
${prefix}.${extension}
*.{vcf,vcf.gz,bcf,bcf.gz}
${prefix}.${extension}.tbi
*.tbi
csi
${prefix}.${extension}.csi
*.csi
versions_bcftools
${task.process}
:string
The process the versions were collected from
bcftools
The tool name
bcftools --version | sed '1!d; s/^.*bcftools //'
The command used to generate the version of the tool
versions
Concatenate VCF files.
