Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
fasta
:file
fasta formatted file with nucleotide sequences
*.{fna,fa,fasta}
index
ref
:directory
Directory containing the index files
versions_bbmap
${task.process}
:string
The name of the process
bbmap
The name of the tool
bbversion.sh | grep -v "Duplicate cpuset"
:eval
The expression to obtain the version of the tool
versions
BBMap is a short read aligner, as well as various other bioinformatic tools.
