Package candidate assemblies for clustering by Autocycler.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
assemblies
:file
Candidate assembly files (typically FASTA) generated for the sample.
*.{fasta,fa,fasta.gz,fa.gz}
gfa
compress/${prefix}/*.gfa
Assembly graph files ready for clustering.
compress/*/*.gfa
stats
compress/${prefix}/*.yaml
Summary statistics generated during compression.
compress/*/*.yaml
versions_autocycler
${task.process}
:string
The name of the process
autocycler
The name of the tool
autocycler --version | sed 's/^[^ ]* //'
:eval
The expression to obtain the version of the tool
versions
A tools for generating consensus long-read assemblies for bacterial genomes.
