Description

mkarv function of a corresponding ataqv tool

Input

name:type
description
pattern

jsons/*

:file

JSON files

*.json

Output

name:type
description
pattern

html

html

:directory

Web application to visualize results in HTML format

*.html

versions_ataqv

${task.process}

:string

The name of the process

ataqv

:string

The name of the tool

echo \$(ataqv --version)

:eval

The expression to obtain the version of the tool

versions_mkarv

${task.process}

:string

The name of the process

mkarv

:string

The name of the tool

mkarv --version

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

ataqv

:string

The name of the tool

echo \$(ataqv --version)

:eval

The expression to obtain the version of the tool

${task.process}

:string

The name of the process

mkarv

:string

The name of the tool

mkarv --version

:eval

The expression to obtain the version of the tool

Tools

ataqv
GPL v3

ataqv is a toolkit for measuring and comparing ATAC-seq results. It was written to help understand how well ATAC-seq assays have worked, and to make it easier to spot differences that might be caused by library prep or sequencing.