Fixes and standardizes GFF/GTF files and outputs a cleaned GFF/GTF file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gxf
:file
Annotation file in GFF3/GTF format
*.{gff, gtf}
output_gff
Groovy Map containing sample information
*.agat.gff
Cleaned annotation file in GFF3 format
*.{gff}
versions_agat
${task.process}
:string
The name of the process
agat
The name of the tool
agat --version | sed 's/v//'
:eval
The expression to obtain the version of the tool
versions
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
