Takes a bed12 file and converts to a GFF3 file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bed
:file
Input bed12 file
*.bed
gff
Groovy Map containing sample information
*.gff
Output GFF3 file
*.{gff}
versions_agat
${task.process}
:string
The name of the process
agat
The name of the tool
agat --version | sed 's/v//'
:eval
The expression to obtain the version of the tool
versions
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
